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Count normalization methods: CPM, TPM, RPKM/FPKM, DESeq2's median of ratios, and EdgeR's trimmed mean of M values (TMM).
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Protein Charge Calculator
Vector Filter (https://www.ncbi.nlm.nih.gov/tools/vecscreen/univec/)
Muscle Multiple Alignment (https://www.drive5.com/muscle/)
RNAHeliCes for RNA folding space analysis based on helices (https://github.com/huang/RNAHeliCes)
bacto: a pipeline for clinical bacteria NGS data
smallRNA: a pipeline for small RNA-seq data analysis
RNAliHeliCes for abstract folding space analysis for aligned RNAs (https://github.com/huang/RNAliHeliCes)
RNAliHiKinetics: RNA folding kinetics for aligned RNAs (https://github.com/huang/RNAliHiKinetics)
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Tetranucleotide frequency
Transcribing DNA into mRNA
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Opportunistic Infection
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Deploy flask uwsgi nginx
Try Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids
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